This led the authors to the interesting conclusion that " Contrary to what we were all taught as undergraduates, the nitrogen atom does indeed form five covalent linkages and the availability or otherwise of d-orbitals has nothing to do with this state of affairs ."
12.
In fact, the enzyme-DNA complex is an intermediate stage, which is followed by the ligation of the 3 OH group of one DNA strand to the 5 phosphate group of the other DNA strand, which is covalently bonded to the tyrosine residue; that is, the covalent linkage between 5 end and tyrosine residue is broken.
13.
Two possible forms of the free radical, thiyl and phenoxyl, are possible; addition of thiyl radical to phenol, or addition of phenoxyl radical to thiol, generates the covalent linkage between the sulfur atom of cysteine and the aromatic ring of tyrosine; A second dioxygen molecule reacts with the copper center coordinated with cross-linked tyrosine-cysteine to generate radical-copper complex.
